Severity Level Classification of Bacterial Leaf Blight Disease (Xanthomonas oryzae) in Rice Plants (Oryza sativa L.) Based on VARI Image Processing

  • Rafi Dwi Nugraha
    Universitas Pembangunan Nasional "Veteran" Jawa Timur
  • Hery Nirwanto
    Universitas Pembangunan Nasional "Veteran" Jawa Timur
  • Sri Wiyatiningsih
    Universitas Pembangunan Nasional "Veteran" Jawa Timur
DOI: https://doi.org/10.23960/jtepl.v15i2.652-662
Keywords Agricultural drones, Digital imagery, Disease detection, Image processing, Vegetation index
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Abstract

Bacterial leaf blight (BLB) caused by Xanthomonas oryzae is one of the main diseases threatening rice productivity in Indonesia. This study aims to classify the severity of BLB in rice plants more effectively using drone-based image processing technology with the VARI (Visible Atmospherically Resistant Index) vegetation index approach. The study was conducted in Wonoayu Subdistrict, Sidoarjo Regency, covering an area of 17 hectares using a DJI Phantom 4 Pro drone equipped with an RGB camera for image acquisition. The data was then analysed through pre-processing, segmentation using the K-Means Clustering method and edge detection, and classification using the Convolutional Neural Network (CNN) algorithm. The results showed that the CNN classification model was able to identify five levels of attack (healthy, mild, moderate, severe, and dead) with an accuracy of 82.25%, and the classification map was able to distinguish the spatial distribution of the disease in agricultural land. This model also showed better performance than conventional monitoring methods. The use of VARI-based image processing from drones has proven effective as an early disease detection method, providing precise solutions for rice plant health management.

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References

Adhikari, T.B., Cruz, C., Zhang, Q., Nelson, R.J., Skinner, D.Z., Mew, T.W., & Leach, J.E. (1995). Genetic diversity of Xanthomonas oryzae pv. oryzae in Asia. Applied and Environmental Microbiology, 61(3), 966–971.

Aftab, U., Ali, S., Ghani, M.U., Sajid, M., Zeshan, M.A., Ahmed, N., & Mahmood, R. (2022). Epidemiological studies of bacterial leaf blight of rice and its management. Basrah Journal of Agricultural Sciences, 35(1), 106–119. https://doi.org/10.37077/25200860.2022.35.1.09

Ashurov, A.Y., Al-Gaashani, M.S.A.M., Samee, N.A., Alkanhel, R., Atteia, G., Abdallah, H.A., & Muthanna, M.S.A. (2025) Enhancing plant disease detection through deep learning: a Depthwise CNN with squeeze and excitation integration and residual skip connections. Frontiers in Plant Science, 15, 1505857. https://doi.org/10.3389/fpls.2024.1505857

Barbedo, J.G.A. (2019). Plant disease identification from individual lesions and spots using deep learning. Biosystems Engineering, 180, 96-107. https://doi.org/10.1016/j.biosystemseng.2019.02.002

Carter, G.A., & Knapp, A.K. (2001). Leaf optical properties in higher plants: linking spectral characteristics to stress and chlorophyll concentration. American Journal of Botany, 88(4), 677–684. https://doi.org/10.2307/2657068

Costa, L., Nunes, L., & Ampatzidis, Y. (2020). A new visible band index (vNDVI) for estimating NDVI values on RGB images utilizing genetic algorithms. Computers and Electronics in Agriculture, 172, 105334. https://doi.org/10.1016/j.compag.2020. 105334

Ferentinos, K.P. (2018). Deep learning models for plant disease detection and diagnosis. Computers and Electronics in Agriculture, 145, 311–318. https://doi.org/10.1016/j.compag.2018.01.009

Gerardo, R., & de Lima, I.P. (2023). Applying RGB-based vegetation indices obtained from UAS imagery for monitoring the rice crop at the field scale: A case study in Portugal. Agriculture, 13(10), 1916. https://doi.org/10.3390/agriculture13101916

Gitelson, A.A., Kaufman, Y.J., Stark, R., & Rundquist, D. (2002). Novel algorithms for remote estimation of vegetation fraction. Remote Sensing of Environment, 80(1), 76–87. https://doi.org/10.1016/S0034-4257(01)00289-9

Hasan, R.I., Yusuf, S.M., & Alzubaidi, L. (2020). Review of the state of the art of deep learning for plant diseases: A broad analysis and discussion. Plants, 9(10), 1302. https://doi.org/10.3390/plants9101302

Huang, B., Reichman, D., Collins, L.M., Bradbury, K., & Malof, J.M. (2019). Tiling and stitching segmentation output for remote sensing: Basic challenges and recommendations. arXiv:1805.12219. https://arxiv.org/abs/1805.12219

Kazemi, F., & Parmehr, E.G. (2023). Evaluation of RGB vegetation indices derived from UAV images for rice crop growth monitoring. ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, X 4/W1 2022, 385–390. https://doi.org/10.5194/isprs-annals-X-4-W1-2022-385-2023

Lin, T.-Y., Goyal, P., Girshick, R., He, K., & Dollár, P. (2017). Focal loss for dense object detection. Proceedings of the IEEE International Conference on Computer Vision (ICCV), 2980–2988. https://doi.org/10.1109/ICCV.2017.324

McKinney, H.H. (1923). Influence of soil temperature and moisture on infection of wheat seedlings by Helminthosporium sativum. Journal of Agricultural Research, 26(5), 195–217.

Mishra, D., Vishnupriya, M.R., Anil, M.G., Konda, K., Raj, Y., & Sonti, R.V. (2013). Pathotype and genetic diversity amongst Indian isolates of Xanthomonas oryzae pv. oryzae. PLoS ONE, 8(11), e81996. https://doi.org/10.1371/journal.pone.0081996

Rexha, G., Papadhopulli, I., Biberaj, A., Agastra, E., Sheme, E., & Meçe, E. (2026). A UAV-based multisensor framework for legal industrial Cannabis monitoring and open-access dataset development. Data in Brief, 65, 112463. https://doi.org/10.1016/j.dib. 2026.112463

Richardson, A.D., Duigan, S.P., & Berlyn, G.P. (2002). An evaluation of noninvasive methods to estimate foliar chlorophyll content. New Phytologist, 153(1), 185–194. https://doi.org/10.1046/j.0028-646X.2001.00289.x

Schaad, N.W., Jones, J.B., & Chun, W. (2001). Laboratory Guide for Identification of Plant Pathogenic Bacteria (3rd ed.). American Phytopathological Society Press, St. Paul, MN, USA. ISBN 089054263

Sims, D.A., & Gamon, J.A. (2002). Relationships between leaf pigment content and spectral reflectance across a wide range of species, leaf structures and developmental stages. Remote Sensing of Environment, 81(2–3), 337–354. https://doi.org/10.1016/S0034-4257(02)00010-X

Singh, D., Sinha, S., & Singh, R. P. (2015). Detection of Xanthomonas oryzae pv. oryzae from seeds and leaves of rice using hrp gene based BIO-PCR marker. Indian Journal of Agricultural Sciences, 85(4), 519–524. https://doi.org/10.56093/ijas.v85i4. 47932

Wang, T., Liu, Y., Wang, M., Fan, Q., Tian, H., Qiao, X., & Li, Y. (2021). Applications of UAS in crop biomass monitoring: A review. Frontiers in Plant Science, 12, 616689. https://doi.org/10.3389/fpls.2021.616689

Zhu, H., Lin, C., Liu, G., Wang, D., Qin, S., Li, A., Xu, J-L., & He, Y. (2024). Intelligent agriculture: deep learning in UAV-based remote sensing imagery for crop diseases and pests detection. Frontiers in Plant Science. 15, 1435016. https://doi.org/10.3389/fpls.2024.1435016

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Published
2026-04-17
How to Cite
Nugraha, R. D., Nirwanto, H., & Wiyatiningsih, S. (2026). Severity Level Classification of Bacterial Leaf Blight Disease (Xanthomonas oryzae) in Rice Plants (Oryza sativa L.) Based on VARI Image Processing. Jurnal Teknik Pertanian Lampung (Journal of Agricultural Engineering), 15(2), 652–662. https://doi.org/10.23960/jtepl.v15i2.652-662